# ===========================================================================
#
#                            PUBLIC DOMAIN NOTICE
#               National Center for Biotechnology Information
#
#  This software/database is a "United States Government Work" under the
#  terms of the United States Copyright Act.  It was written as part of
#  the author's official duties as a United States Government employee and
#  thus cannot be copyrighted.  This software/database is freely available
#  to the public for use. The National Library of Medicine and the U.S.
#  Government have not placed any restriction on its use or reproduction.
#
#  Although all reasonable efforts have been taken to ensure the accuracy
#  and reliability of the software and data, the NLM and the U.S.
#  Government do not and cannot warrant the performance or results that
#  may be obtained by using this software or data. The NLM and the U.S.
#  Government disclaim all warranties, express or implied, including
#  warranties of performance, merchantability or fitness for any particular
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#
#  Please cite the author in any work or product based on this material.
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# ===========================================================================


default: std

TOP ?= $(shell ../../build/abspath.sh ../..)
MODULE = tools/sra-dump

include $(TOP)/build/Makefile.env

INT_TOOLS =

EXT_TOOLS = \
	fastq-dump \
	sff-dump \
	illumina-dump \
	abi-dump

ALL_TOOLS = \
	$(INT_TOOLS) \
	$(EXT_TOOLS)

#-------------------------------------------------------------------------------
# outer targets
#
all std: vers-includes
	@ $(MAKE_CMD) $(TARGDIR)/std

$(ALL_TOOLS): vers-includes
	@ $(MAKE_CMD) $(BINDIR)/$@

.PHONY: all std $(ALL_TOOLS)

#-------------------------------------------------------------------------------
# std
#
$(TARGDIR)/std: \
	$(addprefix $(BINDIR)/,$(ALL_TOOLS))

.PHONY: $(TARGDIR)/std

#-------------------------------------------------------------------------------
# vers-includes
#
$(TARGDIR)/vers-includes: $(addsuffix .vers.h,$(EXT_TOOLS))

.PHONY: $(TARGDIR)/vers-includes

#-------------------------------------------------------------------------------
# clean
#
clean: stdclean

.PHONY: clean

#-------------------------------------------------------------------------------
# Common dumper definitions
#
DUMP_COMMON_SRC = \
	factory \
	fasta_dump \
	core

DUMP_COMMON_LIB = \
	-lkapp \
	-lncbi-vdb \
	-lxml2 \
	-lm

#-------------------------------------------------------------------------------
# fastq-dump
#
FASTQ_DUMP_SRC = \
	$(DUMP_COMMON_SRC) \
	fastq

FASTQ_DUMP_OBJ = \
	$(addsuffix .$(OBJX),$(FASTQ_DUMP_SRC))

$(BINDIR)/fastq-dump: $(FASTQ_DUMP_OBJ)
	$(LD) --exe --vers $(SRCDIR) -o $@ $^ $(DUMP_COMMON_LIB)

#-------------------------------------------------------------------------------
# sff-dump
#
SFF_DUMP_SRC = \
	$(DUMP_COMMON_SRC) \
	sff

SFF_DUMP_OBJ = \
	$(addsuffix .$(OBJX),$(SFF_DUMP_SRC))

$(BINDIR)/sff-dump: $(SFF_DUMP_OBJ)
	$(LD) --exe --vers $(SRCDIR) -o $@ $^ $(DUMP_COMMON_LIB)

#-------------------------------------------------------------------------------
# illumina-dump
#
ILLUMINA_DUMP_SRC = \
	$(DUMP_COMMON_SRC) \
	illumina

ILLUMINA_DUMP_OBJ = \
	$(addsuffix .$(OBJX),$(ILLUMINA_DUMP_SRC))

$(BINDIR)/illumina-dump: $(ILLUMINA_DUMP_OBJ)
	$(LD) --exe --vers $(SRCDIR) -o $@ $^ $(DUMP_COMMON_LIB)

#-------------------------------------------------------------------------------
# abi-dump
#
ABI_DUMP_SRC = \
	$(DUMP_COMMON_SRC) \
	abi

ABI_DUMP_OBJ = \
	$(addsuffix .$(OBJX),$(ABI_DUMP_SRC))

$(BINDIR)/abi-dump: $(ABI_DUMP_OBJ)
	$(LD) --exe --vers $(SRCDIR) -o $@ $^ $(DUMP_COMMON_LIB)

